preprocessCore

This is the development version of preprocessCore; for the stable release version, see preprocessCore.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

A collection of pre-processing functions

Bioconductor version: Development (3.24)

A library of core preprocessing routines.

Author: Ben Bolstad <bmb at bmbolstad.com>

Maintainer: Ben Bolstad <bmb at bmbolstad.com>

Citation (from within R, enter citation("preprocessCore")):

Ben Bolstad. preprocessCore: A collection of pre-processing functions. doi:10.18129/B9.bioc.preprocessCore, R package version 1.75.1, https://bioconductor.org/packages/preprocessCore.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("preprocessCore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Infrastructure, Software
Version	1.75.1
In Bioconductor since	BioC 2.1 (R-2.6) (19 years)
License	LGPL (>= 2)
Depends
Imports	stats
System Requirements
URL	https://github.com/bmbolstad/preprocessCore

Suggests
Linking To
Enhances
Depends On Me	affyPLM, AgiMicroRna, crlmm
Imports Me	ADAPTS, affy, BloodGen3Module, bnbc, ChAMP, cinaR, cn.farms, CPSM, crupR, cypress, DaparToolshed, dicepro, EMDomics, ExiMiR, FARDEEP, fastLiquidAssociation, frma, frmaTools, GSE13015, hipathia, iCheck, InPAS, lilikoi, lumi, MBCB, MBQN, MEDIPS, methylclock, mimager, minfi, MSstats, netZooR, noise, noisyr, NormalyzerDE, oligo, PanomiR, PECA, PhosR, Pigengene, proBatch, PRONE, qPLEXanalyzer, quantiseqr, retriever, sesame, SMDIC, WGCNA, yarn
Suggests Me	aroma.affymetrix, aroma.core, cellNexus, DAPAR, DAssemble, DspikeIn, IOBR, MsCoreUtils, multiClust, QFeatures, roastgsa, scp, SigBridgeRUtils, simPIC, splatter, tidybulk, tidytof, wateRmelon, wrMisc, wrTopDownFrag
Links To Me	affy, affyPLM, crlmm, oligo
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	preprocessCore_1.75.1.tar.gz
Windows Binary (x86_64)	preprocessCore_1.75.1.zip
macOS Binary (big-sur-x86_64)	preprocessCore_1.75.1.tgz
macOS Binary (sonoma-arm64)	preprocessCore_1.75.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/preprocessCore
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/preprocessCore
Package Short Url	https://bioconductor.org/packages/preprocessCore/
Package Downloads Report	Download Stats