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frma

This is the development version of frma; for the stable release version, see frma.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6

Frozen RMA and Barcode


Bioconductor version: Development (3.24)

Preprocessing and analysis for single microarrays and microarray batches.

Author: Matthew N. McCall <mccallm at gmail.com>, Rafael A. Irizarry <rafa at jhu.edu>, with contributions from Terry Therneau

Maintainer: Matthew N. McCall <mccallm at gmail.com>

Citation (from within R, enter citation("frma")):

Matthew N. McCall, Rafael A. Irizarry, with contributions from Terry Therneau. frma: Frozen RMA and Barcode. doi:10.18129/B9.bioc.frma, R package version 1.65.0, https://bioconductor.org/packages/frma.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("frma")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("frma")
frma: Preprocessing for single arrays and array batches PDF R Script
Reference ManualPDF
NEWSText

Details

biocViews Microarray, Preprocessing, Software
Version1.65.0
In Bioconductor sinceBioC 2.6 (R-2.11) (16.5 years)
License GPL (>= 2)
Depends R (>= 2.10.0), Biobase (>= 2.6.0)
Imports Biobase, MASS, DBI, affy, methods, oligo, oligoClasses, preprocessCore, utils, BiocGenerics
System Requirements
URLhttp://bioconductor.org
See More
Suggests hgu133afrmavecs, frmaExampleData
Linking To
Enhances
Depends On Me
Imports Me ChIPXpress, DeSousa2013, rat2302frmavecs
Suggests Me antiProfilesData, ath1121501frmavecs, frmaTools
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package frma_1.65.0.tar.gz
Windows Binary (x86_64) frma_1.65.0.zip (64-bit only)
macOS Binary (big-sur-x86_64) frma_1.65.0.tgz
macOS Binary (sonoma-arm64) frma_1.65.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/frma
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/frma
Package Short Url https://bioconductor.org/packages/frma/
Package Downloads ReportDownload Stats