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RmzTabM

R API for the mzTab-M Reference Implementation

Bioconductor version: 3.24 · Package version: 0.99.2

The RmzTabM package provides functions to read and write files in the HUPO-PSI mzTab-M file format for reporting of results from metabolomics and lipidomics experiments. This package represents the reference implementation for mzTab-M import/export for R. Core, low level functions allow to format and parse the individual sections of the mzTab-M format. These functions are designed to be re-used by other packages implementing import/export of results in mzTab-M.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RmzTabM")

Details

MaintainerJohannes Rainer <johannes.rainer@eurac.edu>
AuthorNils Hoffmann [ctb] (ORCID: <https://orcid.org/0000-0002-6540-6875>), Steffen Neumann [ctb] (ORCID: <https://orcid.org/0000-0002-7899-7192>), Johannes Rainer [aut, cre] (ORCID: <https://orcid.org/0000-0002-6977-7147>), Philippine Louail [aut] (ORCID: <https://orcid.org/0009-0007-5429-6846>, fnd: European Union HORIZON-MSCA-2021 project Grant No. 101073062: HUMAN – Harmonising and Unifying Blood Metabolic Analysis Networks), Gabriele Tomè [aut] (ORCID: <https://orcid.org/0000-0002-3976-6068>, fnd: MetaRbolomics4Galaxy project (CUP: D53C25001030003) co-funded by the Autonomous Province of Bolzano under the Joint Projects South Tyrol–Germany 2025 program.)
LicenseArtistic-2.0
URLhttps://github.com/RforMassSpectrometry/RmzTabM
Bug Reportshttps://github.com/RforMassSpectrometry/RmzTabM/issues
System Requirementspandoc, quarto
Downloads rank27
Source branchdevel
biocViewsInfrastructure, MassSpectrometry, Metabolomics, Proteomics, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageRmzTabM_0.99.2.tar.gz
Windows binary (x86_64)RmzTabM_0.99.2.zip
macOS binary (arm64)RmzTabM_0.99.2.tgz
macOS binary (x86_64)RmzTabM_0.99.2.tgz
Dependencies

Depends: R (>= 4.5)

Imports: data.table, methods, SummarizedExperiment, stats, utils

Suggests: testthat, pkgdown, BiocStyle, knitr, rmarkdown, quarto, pander