RmzTabM
This is the development version of RmzTabM; to use it, please install the devel version of Bioconductor.
R API for the mzTab-M Reference Implementation
Bioconductor version: Development (3.24)
The RmzTabM package provides functions to read and write files in the HUPO-PSI mzTab-M file format for reporting of results from metabolomics and lipidomics experiments. This package represents the reference implementation for mzTab-M import/export for R. Core, low level functions allow to format and parse the individual sections of the mzTab-M format. These functions are designed to be re-used by other packages implementing import/export of results in mzTab-M.
Author: Nils Hoffmann [ctb] 
, Steffen Neumann [ctb] , Johannes Rainer [aut, cre] , Philippine Louail [aut] (ORCID: , fnd: European Union HORIZON-MSCA-2021 project Grant No. 101073062: HUMAN – Harmonising and Unifying Blood Metabolic Analysis Networks), Gabriele Tomè [aut] (ORCID: , fnd: MetaRbolomics4Galaxy project (CUP: D53C25001030003) co-funded by the Autonomous Province of Bolzano under the Joint Projects South Tyrol–Germany 2025 program.)
Maintainer: Johannes Rainer <johannes.rainer at eurac.edu>
citation("RmzTabM")):Johannes Rainer, Philippine Louail, Gabriele Tomè. RmzTabM: R API for the mzTab-M Reference Implementation. doi:10.18129/B9.bioc.RmzTabM, R package version 0.99.3, https://bioconductor.org/packages/RmzTabM.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("RmzTabM")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RmzTabM")| rmztabm-api.html | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software |
| Version | 0.99.3 |
| In Bioconductor since | BioC 3.24 (R-4.6) |
| License | Artistic-2.0 |
| Depends | R (>= 4.5) |
| Imports | data.table, methods, SummarizedExperiment, stats, utils, BiocFileCache, cli, jsonlite |
| System Requirements | pandoc, quarto |
| URL | https://github.com/RforMassSpectrometry/RmzTabM |
| Bug Reports | https://github.com/RforMassSpectrometry/RmzTabM/issues |
See More
| Suggests | testthat, alabaster.se, xcms, MsBackendMetaboLights, pkgdown, BiocStyle, knitr, rmarkdown, quarto, pander |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RmzTabM_0.99.3.tar.gz |
| Windows Binary (x86_64) | RmzTabM_0.99.3.zip |
| macOS Binary (big-sur-x86_64) | RmzTabM_0.99.2.tgz |
| macOS Binary (sonoma-arm64) | RmzTabM_0.99.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RmzTabM |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RmzTabM |
| Package Short Url | https://bioconductor.org/packages/RmzTabM/ |
| Package Downloads Report | Download Stats |