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augere.solo

This is the development version of augere.solo; to use it, please install the devel version of Bioconductor.

Automatic Generation of Single-Cell Analyses

DOI: 10.18129/B9.bioc.augere.solo

Bioconductor version: Development (3.24)

Implements pipelines for generating single-cell analysis reports in the augere framework. This uses scrapper to execute routine steps such as quality control, normalization, feature selection, clustering and marker detection. We also implement a pipeline for automatic cell type annotation against a labelled reference with SingleR. Each pipeline function generates a self-contained Rmarkdown report with all of the steps required to reproduce its analysis.

Author: Aaron Lun [cre, aut] ORCID: 0000-0002-3564-4813

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("augere.solo")):

Aaron Lun. augere.solo: Automatic Generation of Single-Cell Analyses. doi:10.18129/B9.bioc.augere.solo, R package version 0.99.3, https://bioconductor.org/packages/augere.solo.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("augere.solo")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("augere.solo")

Details

Package Archives

Follow Installation instructions to use this package in your R session.