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augere.core

This is the development version of augere.core; to use it, please install the devel version of Bioconductor.

Core Utilities for Automatically Generated Reports

DOI: 10.18129/B9.bioc.augere.core

Bioconductor version: Development (3.24)

Provides utility functions for automatic generation of reports in the augere framework. This mostly involves parsing and dynamically editing Rmarkdown files, controlling inputs into the augere pipelines. Each pipeline generates and executes a self-contained Rmarkdown file for a common bioinformatics analysis; see downstream packages like augere.de and augere.screen for examples of some analysis pipelines.

Author: Aaron Lun [cre, aut] ORCID: 0000-0002-3564-4813

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("augere.core")):

Aaron Lun. augere.core: Core Utilities for Automatically Generated Reports. doi:10.18129/B9.bioc.augere.core, R package version 0.99.3, https://bioconductor.org/packages/augere.core.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("augere.core")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("augere.core")

Details

Package Archives

Follow Installation instructions to use this package in your R session.