furrowSeg

This package is for version 3.23 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see furrowSeg.

All versions

3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3

Furrow Segmentation

Bioconductor version: Release (3.23)

Image feature data and analysis codes for the Guglielmi, Barry et al. paper describing the application of an optogenetics tools to disrupt Drosophila embryo furrowing.

Author: Joseph Barry

Maintainer: Joseph Barry <joseph.barry at embl.de>

Citation (from within R, enter citation("furrowSeg")):

Joseph Barry. furrowSeg: Furrow Segmentation. doi:10.18129/B9.bioc.furrowSeg, R package version 1.39.0, https://bioconductor.org/packages/furrowSeg.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("furrowSeg")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("furrowSeg")

Supplementary Methods - Example furrow segmentation	PDF	R Script
Supplementary Methods - Automatic generation of paper figures	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Drosophila_melanogaster_Data, ExperimentData, ReproducibleResearch, Tissue
Version	1.39.0
In Bioconductor since	BioC 3.3 (R-3.3) (10.5 years)
License	Artistic-2.0
Depends	R (>= 3.3), EBImage
Imports	abind, dplyr, locfit, tiff
System Requirements
URL

Suggests	BiocStyle, ggplot2, knitr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	furrowSeg_1.39.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/furrowSeg
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/furrowSeg
Package Short Url	https://bioconductor.org/packages/furrowSeg/
Package Downloads Report	Download Stats