receptLoss
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.23 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see receptLoss.
Unsupervised Identification of Genes with Expression Loss in Subsets of Tumors
Bioconductor version: Release (3.23)
receptLoss identifies genes whose expression is lost in subsets of tumors relative to normal tissue. It is particularly well-suited in cases where the number of normal tissue samples is small, as the distribution of gene expression in normal tissue samples is approximated by a Gaussian. Originally designed for identifying nuclear hormone receptor expression loss but can be applied transcriptome wide as well.
Author: Daniel Pique, John Greally, Jessica Mar
Maintainer: Daniel Pique <daniel.pique at med.einstein.yu.edu>
citation("receptLoss")):Daniel Pique, John Greally, Jessica Mar. receptLoss: Unsupervised Identification of Genes with Expression Loss in Subsets of Tumors. doi:10.18129/B9.bioc.receptLoss, R package version 1.24.0, https://bioconductor.org/packages/receptLoss.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("receptLoss")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| No vignettes available | |
| Reference Manual |
Details
| biocViews | GeneExpression, Software, StatisticalMethod |
| Version | 1.24.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (6.5 years) |
| License | GPL-3 + file LICENSE |
| Depends | R (>= 3.6.0) |
| Imports | dplyr, ggplot2, magrittr, tidyr, SummarizedExperiment |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, testthat (>= 2.1.0), here |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/receptLoss |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/receptLoss |
| Package Short Url | https://bioconductor.org/packages/receptLoss/ |
| Package Downloads Report | Download Stats |