annotation
This package is for version 3.23 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see annotation.
Genomic Annotation Resources
Bioconductor version: Release (3.23)
Annotation resources make up a significant proportion of the Bioconductor project. And there are also a diverse set of online resources available which are accessed using specific packages. This walkthrough will describe the most popular of these resources and give some high level examples on how to use them.
Author: Marc RJ Carlson [aut], Hervé Pagès [aut], Sonali Arora [aut], Valerie Obenchain [aut], Martin Morgan [aut], Lori Shepherd [ctb], Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("annotation")):Marc RJ Carlson, Hervé Pagès, Sonali Arora, Valerie Obenchain, Martin Morgan. annotation: Genomic Annotation Resources. doi:10.18129/B9.bioc.annotation, R package version 1.36.0, https://bioconductor.org/packages/annotation.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("annotation")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("annotation")| Annotating Genomic Ranges | HTML | R Script |
| Genomic Annotation Resources | HTML | R Script |
Details
| biocViews | AnnotationWorkflow, Workflow |
| Version | 1.36.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (8.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.3.0), GenomeInfoDb, VariantAnnotation, AnnotationHub, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Hsapiens.UCSC.hg38.knownGene, TxDb.Mmusculus.UCSC.mm10.ensGene, org.Hs.eg.db, org.Mm.eg.db, Homo.sapiens, BSgenome.Hsapiens.UCSC.hg19, biomaRt, BSgenome, TxDb.Athaliana.BioMart.plantsmart22 |
| Imports | |
| System Requirements | |
| URL | http://bioconductor.org/packages/annotation |
See More
| Suggests | knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | annotation_1.36.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/annotation |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/annotation |
| Package Short Url | https://bioconductor.org/packages/annotation/ |
| Package Downloads Report | Download Stats |