synaptome.data
This is the released version of synaptome.data; for the devel version, see synaptome.data.
AnnotationData for Synaptome.DB package
Bioconductor version: Release (3.23)
The package provides access to the copy of the Synaptic proteome database. It was designed as an accompaniment for Synaptome.DB package. Database provides information for specific synaptic genes and allows building the protein-protein interaction graph for gene sets, synaptic compartments, and brain regions. In the current update we added 6 more synaptic proteome studies, which resulted in total of 64 studies. We introduced Synaptic Vesicle as a separate compartment. We also added coding mutations for Autistic Spectral disorder and Epilepsy collected from publicly available databases.
Author: Anatoly Sorokin [aut], Oksana Sorokina [aut, cre], J. Douglas Armstrong [aut]
Maintainer: Oksana Sorokina <oksana.sorokina at ed.ac.uk>
citation("synaptome.data")):Anatoly Sorokin, Oksana Sorokina, J. Douglas Armstrong. synaptome.data: AnnotationData for Synaptome.DB package. doi:10.18129/B9.bioc.synaptome.data, R package version 0.99.6, https://bioconductor.org/packages/synaptome.data.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("synaptome.data")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("synaptome.data")| data_vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | AnnotationData, AnnotationHub, CustomDBSchema, FunctionalAnnotation |
| Version | 0.99.6 |
| In Bioconductor since | BioC 3.14 (R-4.1) (5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0), AnnotationHub |
| Imports | |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/lptolik/synaptome.db/issues/ |
See More
| Suggests | BiocStyle, knitr, RefManageR, rmarkdown, sessioninfo |
| Linking To | |
| Enhances | |
| Depends On Me | synaptome.db |
| Imports Me | |
| Suggests Me | |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | synaptome.data_0.99.6.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Package Short Url | https://bioconductor.org/packages/synaptome.data/ |
| Package Downloads Report | Download Stats |