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rnaseqcomp

This is the released version of rnaseqcomp; for the devel version, see rnaseqcomp.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2

Benchmarks for RNA-seq Quantification Pipelines

DOI: 10.18129/B9.bioc.rnaseqcomp

Bioconductor version: Release (3.23)

Several quantitative and visualized benchmarks for RNA-seq quantification pipelines. Two-condition quantifications for genes, transcripts, junctions or exons by each pipeline with necessary meta information should be organized into numeric matrices in order to proceed the evaluation.

Author: Mingxiang Teng and Rafael A. Irizarry

Maintainer: Mingxiang Teng <tengmx at gmail.com>

Citation (from within R, enter citation("rnaseqcomp")):

Mingxiang Teng and Rafael A. Irizarry. rnaseqcomp: Benchmarks for RNA-seq Quantification Pipelines. doi:10.18129/B9.bioc.rnaseqcomp, R package version 1.42.0, https://bioconductor.org/packages/rnaseqcomp.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rnaseqcomp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rnaseqcomp")

Details

Package Archives

Follow Installation instructions to use this package in your R session.