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multiGSEA

This is the released version of multiGSEA; for the devel version, see multiGSEA.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12

Combining GSEA-based pathway enrichment with multi omics data integration

DOI: 10.18129/B9.bioc.multiGSEA

Bioconductor version: Release (3.23)

Extracted features from pathways derived from 8 different databases (KEGG, Reactome, Biocarta, etc.) can be used on transcriptomic, proteomic, and/or metabolomic level to calculate a combined GSEA-based enrichment score.

Author: Sebastian Canzler [aut, cre] ORCID: 0000-0001-7935-9582 , Jörg Hackermüller [aut] ORCID: 0000-0003-4920-7072

Maintainer: Sebastian Canzler <sebastian.canzler at ufz.de>

Citation (from within R, enter citation("multiGSEA")):

Sebastian Canzler, Jörg Hackermüller. multiGSEA: Combining GSEA-based pathway enrichment with multi omics data integration. doi:10.18129/B9.bioc.multiGSEA, R package version 1.22.0, https://bioconductor.org/packages/multiGSEA.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("multiGSEA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("multiGSEA")

Details

Package Archives

Follow Installation instructions to use this package in your R session.