limmaGUI

This is the released version of limmaGUI; for the devel version, see limmaGUI.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

GUI for limma Package With Two Color Microarrays

Bioconductor version: Release (3.23)

A Graphical User Interface for differential expression analysis of two-color microarray data using the limma package.

Author: James Wettenhall [aut], Gordon Smyth [aut], Keith Satterley [ctb]

Maintainer: Gordon Smyth <smyth at wehi.edu.au>

Citation (from within R, enter citation("limmaGUI")):

James Wettenhall, Gordon Smyth. limmaGUI: GUI for limma Package With Two Color Microarrays. doi:10.18129/B9.bioc.limmaGUI, R package version 1.88.0, https://bioconductor.org/packages/limmaGUI.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("limmaGUI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("limmaGUI")

Extracting limma objects from limmaGUI files	PDF
limmaGUI Vignette	PDF	R Script
LinModIntro.pdf	PDF
about.html	HTML
CustMenu.html	HTML
import.html	HTML
index.html	HTML
InputFiles.html	HTML
lgDevel.html	HTML
windowsFocus.html	HTML
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	BatchEffect, Bayesian, DataImport, DifferentialExpression, GUI, GeneExpression, Microarray, MultipleComparison, Normalization, Preprocessing, QualityControl, Regression, Software, TimeCourse, TwoChannel, mRNAMicroarray
Version	1.88.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 21.5 years)
License	GPL (>=2)
Depends
Imports	methods, grDevices, graphics, limma, R2HTML, tcltk, tkrplot, xtable, utils
System Requirements
URL	http://bioinf.wehi.edu.au/limmaGUI/

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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	limmaGUI_1.88.0.tar.gz
Windows Binary (x86_64)	limmaGUI_1.88.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	limmaGUI_1.88.0.tgz
macOS Binary (sonoma-arm64)	limmaGUI_1.88.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/limmaGUI
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/limmaGUI
Package Short Url	https://bioconductor.org/packages/limmaGUI/
Package Downloads Report	Download Stats