Bioconductor Developer Survey 2026 Now Open!

Anaquin

This is the released version of Anaquin; for the devel version, see Anaquin.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4

Statistical analysis of sequins


Bioconductor version: Release (3.23)

The project is intended to support the use of sequins (synthetic sequencing spike-in controls) owned and made available by the Garvan Institute of Medical Research. The goal is to provide a standard open source library for quantitative analysis, modelling and visualization of spike-in controls.

Author: Ted Wong

Maintainer: Ted Wong <t.wong at garvan.org.au>

Citation (from within R, enter citation("Anaquin")):

Ted Wong. Anaquin: Statistical analysis of sequins. doi:10.18129/B9.bioc.Anaquin, R package version 2.36.0, https://bioconductor.org/packages/Anaquin.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Anaquin")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Anaquin")
Anaquin - Vignette PDF R Script
Reference ManualPDF
NEWSText
LICENSEText

Details

biocViews DifferentialExpression, GeneExpression, ImmunoOncology, Preprocessing, RNASeq, Software
Version2.36.0
In Bioconductor sinceBioC 3.4 (R-3.3) (10 years)
License BSD_3_clause + file LICENSE
Depends R (>= 3.3), ggplot2 (>= 2.2.0)
Imports ggplot2, ROCR, knitr, qvalue, locfit, methods, stats, utils, plyr, DESeq2
System Requirements
URLwww.sequin.xyz
Bug Reportshttps://github.com/student-t/RAnaquin/issues
See More
Suggests RUnit, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Anaquin_2.36.0.tar.gz
Windows Binary (x86_64) Anaquin_2.36.0.zip
macOS Binary (big-sur-x86_64) Anaquin_2.36.0.tgz
macOS Binary (sonoma-arm64) Anaquin_2.36.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/Anaquin
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/Anaquin
Package Short Url https://bioconductor.org/packages/Anaquin/
Package Downloads ReportDownload Stats