savingBiocObjects
Saving Bioconductor Objects for Sharing
Bioconductor version: 3.24 · Package version: 0.99.1
Documentation and guidance on strategies for saving and sharing Bioconductor objects, covering RDS serialization, HDF5-backed storage, the alabaster ecosystem for cross-language interoperability, exporting genomic ranges to standard formats, and preserving object metadata.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("savingBiocObjects") Details
| Maintainer | Michael Love <michaelisaiahlove@gmail.com> |
| Author | Michael Love [aut, cre] (ORCID: <https://orcid.org/0000-0001-8401-0545>) |
| License | MIT + file LICENSE |
| URL | https://mikelove.github.io/savingBiocObjects, https://bioconductor.org/packages/savingBiocObjects/ |
| Bug Reports | https://github.com/mikelove/savingBiocObjects/issues |
| System Requirements | Quarto (https://quarto.org) |
| Source branch | devel |
| biocViews | BasicWorkflow, Workflow |
Download
Follow the installation instructions to use this package in your R session.
| Source package | savingBiocObjects_0.99.1.tar.gz |
Dependencies
Suggests: SummarizedExperiment, SingleCellExperiment, GenomicRanges, HDF5Array, anndataR, alabaster.base, alabaster.se, rtracklayer, plyranges, jsonlite, BiocManager, knitr, quarto