ccdata

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of ccdata; for the stable release version, see ccdata.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4

Data for Combination Connectivity Mapping (ccmap) Package

Bioconductor version: Development (3.24)

This package contains microarray gene expression data generated from the Connectivity Map build 02 and LINCS l1000. The data are used by the ccmap package to find drugs and drug combinations to mimic or reverse a gene expression signature.

Author: Alex Pickering

Maintainer: Alex Pickering <alexvpickering at gmail.com>

Citation (from within R, enter citation("ccdata")):

Alex Pickering. ccdata: Data for Combination Connectivity Mapping (ccmap) Package. doi:10.18129/B9.bioc.ccdata, R package version 1.39.1, https://bioconductor.org/packages/ccdata.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("ccdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExpressionData, MicroarrayData
Version	1.39.1
In Bioconductor since	BioC 3.4 (R-3.3) (10 years)
License	MIT + file LICENSE
Depends	R (>= 3.3)
Imports
System Requirements
URL

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Suggests Me	retriever
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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ccdata_1.39.1.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/ccdata
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ccdata
Package Short Url	https://bioconductor.org/packages/ccdata/
Package Downloads Report	Download Stats