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TxDb.Hsapiens.UCSC.hg19.knownGene

This is the development version of TxDb.Hsapiens.UCSC.hg19.knownGene; for the stable release version, see TxDb.Hsapiens.UCSC.hg19.knownGene.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9

Annotation package for TxDb object(s)


Bioconductor version: Development (3.24)

Exposes an annotation databases generated from UCSC by exposing these as TxDb objects

Author: Bioconductor Core Team, Bioconductor Package Maintainer <maintainer at bioconductor.org> [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("TxDb.Hsapiens.UCSC.hg19.knownGene")):

Bioconductor Core Team, Bioconductor Package Maintainer. TxDb.Hsapiens.UCSC.hg19.knownGene: Annotation package for TxDb object(s). doi:10.18129/B9.bioc.TxDb.Hsapiens.UCSC.hg19.knownGene, R package version 3.22.1, https://bioconductor.org/packages/TxDb.Hsapiens.UCSC.hg19.knownGene.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("TxDb.Hsapiens.UCSC.hg19.knownGene")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference ManualPDF
Need some help? Ask on the Bioconductor Support site!

Details

biocViews AnnotationData, Genetics, Homo_sapiens, TxDb
Version3.22.1
In Bioconductor sinceBioC 2.9 (R-2.14) (15 years)
License Artistic-2.0
Depends GenomicFeatures
Imports AnnotationDbi
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me FDb.InfiniumMethylation.hg19, Homo.sapiens, variants, vulcan
Imports Me appreci8R, ChIPQC, ChIPseeker, crupR, fourSynergy, HiLDA, musicatk, OutSplice, profileplyr, RareVariantVis, rCGH, rGREAT, signifinder, uncoverappLib
Suggests Me AllelicImbalance, AnnotationDbi, annotatr, ATACseqQC, beadarray, Bioc.gff, BiocParallel, biomvRCNS, biovizBase, borealis, bumphunter, chipenrich.data, ChIPpeakAnno, chromPlot, cinaR, CNVRanger, cpvSNP, CRISPRseek, derfinder, derfinderPlot, dmrseq, driveR, EpiCompare, EpiMix, epimutacions, esATAC, FRASER, GA4GHclient, GA4GHshiny, gage, geneAttribution, GENESIS, GenomicAlignments, GenomicFeatures, GenomicInteractionNodes, GenVisR, geomeTriD, ggbio, gmapR, GOaGO, GRaNIE, groHMM, GUIDEseq, gwascat, HelloRanges, InPAS, karyoploteR, MAST, MesKit, methylumi, MutationalPatterns, NanoMethViz, NoRCE, oncoPredict, OUTRIDER, pageRank, plotgardener, ProteoDisco, PureCN, R3CPET, ramr, regionalpcs, regionReport, rtracklayer, SGSeq, SNPassoc, SOMNiBUS, StructuralVariantAnnotation, SummarizedExperiment, svaNUMT, svaRetro, TCGAutils, TFEA.ChIP, trackViewer, transcriptR, tximport, UMI4Cats, VariantAnnotation, VariantFiltering
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TxDb.Hsapiens.UCSC.hg19.knownGene_3.22.1.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Package Short Url https://bioconductor.org/packages/TxDb.Hsapiens.UCSC.hg19.knownGene/
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