splicelogic
This is the development version of splicelogic; for the stable release version, see splicelogic.
splicelogic: differential transcripts to splice events
Bioconductor version: Development (3.24)
Translate differential transcript usage results into discrete splice events.
Author: Beatriz Campillo [aut, cre] 
, Michael Love [aut] , NIH NHGRI [fnd], Wellcome Trust [fnd]
Maintainer: Beatriz Campillo <beatrizcampillo29 at gmail.com>
citation("splicelogic")):Beatriz Campillo, Michael Love. splicelogic: splicelogic: differential transcripts to splice events. doi:10.18129/B9.bioc.splicelogic, R package version 1.1.4, https://bioconductor.org/packages/splicelogic.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("splicelogic")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("splicelogic")| Introduction to `splicelogic` | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | AlternativeSplicing, Annotation, DifferentialSplicing, FunctionalGenomics, LongRead, RNASeq, Software, Transcriptomics |
| Version | 1.1.4 |
| In Bioconductor since | BioC 3.23 (R-4.6) (< 6 months) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.5.0) |
| Imports | dplyr, magrittr, GenomicRanges, plyranges, tibble, IRanges, S4Vectors, rlang, methods, stats |
| System Requirements | |
| URL | https://github.com/thelovelab/splicelogic https://thelovelab.github.io/splicelogic |
| Bug Reports | https://github.com/thelovelab/splicelogic/issues |
See More
| Suggests | knitr, rmarkdown, testthat (>= 3.0.0), readr, wiggleplotr, GenomicFeatures, AnnotationHub, ggplot2, AnnotationDbi, Seqinfo, BSgenome, Biostrings, BSgenome.Hsapiens.UCSC.hg38 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | splicelogic_1.1.4.tar.gz |
| Windows Binary (x86_64) | splicelogic_1.1.4.zip |
| macOS Binary (big-sur-x86_64) | splicelogic_1.1.4.tgz |
| macOS Binary (sonoma-arm64) | splicelogic_1.1.4.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/splicelogic |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/splicelogic |
| Package Short Url | https://bioconductor.org/packages/splicelogic/ |
| Package Downloads Report | Download Stats |