rTRMui

This is the development version of rTRMui; for the stable release version, see rTRMui.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13

A shiny user interface for rTRM

Bioconductor version: Development (3.24)

This package provides a web interface to compute transcriptional regulatory modules with rTRM.

Author: Diego Diez

Maintainer: Diego Diez <diego10ruiz at gmail.com>

Citation (from within R, enter citation("rTRMui")):

Diego Diez. rTRMui: A shiny user interface for rTRM. doi:10.18129/B9.bioc.rTRMui, R package version 1.51.0, https://bioconductor.org/packages/rTRMui.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("rTRMui")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rTRMui")

Introduction to rTRMui	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GUI, GeneRegulation, GraphAndNetwork, Network, Software, Transcription
Version	1.51.0
In Bioconductor since	BioC 2.13 (R-3.0) (13 years)
License	GPL-3
Depends
Imports	shiny (>= 0.9), rTRM, MotifDb, org.Hs.eg.db, org.Mm.eg.db
System Requirements
URL	https://github.com/ddiez/rTRMui
Bug Reports	https://github.com/ddiez/rTRMui/issues

Suggests
Linking To
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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rTRMui_1.51.0.tar.gz
Windows Binary (x86_64)	rTRMui_1.51.0.zip
macOS Binary (big-sur-x86_64)	rTRMui_1.51.0.tgz
macOS Binary (sonoma-arm64)	rTRMui_1.51.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rTRMui
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rTRMui
Package Short Url	https://bioconductor.org/packages/rTRMui/
Package Downloads Report	Download Stats