pgen2gds
Format Conversion between PLINK2 PGEN and GDS
Bioconductor version: 3.24 · Package version: 0.99.4
Provides functions to convert files from the PLINK2 pgen format to SeqArray GDS, and from SeqArray GDS to the PLINK2 pgen format.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pgen2gds")Details
| Maintainer | Xiuwen Zheng <zhengx@u.washington.edu> |
| Author | Xiuwen Zheng [aut, cre] (ORCID: <https://orcid.org/0000-0002-1390-0708>) |
| License | GPL-3 + file LICENSE |
| URL | https://github.com/zhengxwen/pgen2gds |
| Bug Reports | https://github.com/zhengxwen/pgen2gds/issues |
| Downloads rank | 46 |
| Source branch | devel |
| biocViews | DataImport, Genetics, Infrastructure, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | pgen2gds_0.99.4.tar.gz |
| Windows binary (x86_64) | pgen2gds_0.99.4.zip |
| macOS binary (arm64) | pgen2gds_0.99.4.tgz |
| macOS binary (x86_64) | pgen2gds_0.99.4.tgz |
Dependencies
Depends: methods, gdsfmt (>= 1.24.0)
Imports: SeqArray (>= 1.49.6), pgenlibr
LinkingTo: gdsfmt
Suggests: parallel, digest, crayon, GenomicRanges, testthat (>= 3.0.0), knitr, rmarkdown, BiocStyle, BiocGenerics