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ndexr

This is the development version of ndexr; for the stable release version, see ndexr.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6

NDEx R client library

DOI: 10.18129/B9.bioc.ndexr

Bioconductor version: Development (3.24)

This package offers an interface to NDEx servers, e.g. the public server at http://ndexbio.org/. It can retrieve and save networks via the API. Networks are offered as RCX object and as igraph representation.

Author: Florian Auer [cre, aut] ORCID: 0000-0002-5320-8900 , Frank Kramer [ctb], Alex Ishkin [ctb], Dexter Pratt [ctb]

Maintainer: Florian Auer <florian.auer at informatik.uni-augsburg.de>

Citation (from within R, enter citation("ndexr")):

Florian Auer. ndexr: NDEx R client library. doi:10.18129/B9.bioc.ndexr, R package version 1.35.0, https://bioconductor.org/packages/ndexr.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("ndexr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ndexr")

Details

Package Archives

Follow Installation instructions to use this package in your R session.