msgbsR
msgbsR: methylation sensitive genotyping by sequencing (MS-GBS) R functions
Bioconductor version: 3.24 · Package version: 1.37.0
Pipeline for the anaysis of a MS-GBS experiment.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("msgbsR")Details
| Maintainer | Benjamin Mayne <benjamin.mayne@adelaide.edu.au> |
| Author | Benjamin Mayne |
| License | GPL-2 |
| Downloads rank | 475 |
| Source branch | devel |
| biocViews | DataImport, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylSeq, Software |
Download
Follow the installation instructions to use this package in your R session.
| Source package | msgbsR_1.37.0.tar.gz |
| Windows binary (x86_64) | msgbsR_1.37.0.zip |
| macOS binary (arm64) | msgbsR_1.37.0.tgz |
| macOS binary (x86_64) | msgbsR_1.37.0.tgz |
Dependencies
Depends: R (>= 3.5.0), GenomicRanges, methods
Imports: BSgenome, easyRNASeq, edgeR, GenomicAlignments, GenomicFeatures, Seqinfo, ggbio, ggplot2, IRanges, parallel, plyr, Rsamtools, R.utils, stats, SummarizedExperiment, S4Vectors, utils
Suggests: roxygen2, BSgenome.Rnorvegicus.UCSC.rn6