lcmsPlot
This is the development version of lcmsPlot; for the stable release version, see lcmsPlot.
Comprehensive Liquid Chromatography-Mass Spectrometry (LC-MS) data visualisation package
Bioconductor version: Development (3.24)
lcmsPlot is an R package designed for visualising Liquid Chromatography-Mass Spectrometry (LC-MS) data with publication-ready high-quality plots. The package enables users to generate and customise chromatograms, mass traces, spectra, and more with fine-tuned aesthetics and annotation options.
Author: Ossama Edbali [aut, cre] 
, Ralf Johannes Maria Weber [aut]
Maintainer: Ossama Edbali <o.edbali at bham.ac.uk>
citation("lcmsPlot")):Ossama Edbali, Ralf Johannes Maria Weber. lcmsPlot: Comprehensive Liquid Chromatography-Mass Spectrometry (LC-MS) data visualisation package. doi:10.18129/B9.bioc.lcmsPlot, R package version 1.1.17, https://bioconductor.org/packages/lcmsPlot.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("lcmsPlot")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("lcmsPlot")| Creating publication-ready LC-MS data plots | HTML | R Script |
| Easy-to-use, intuitive, and efficient LC-MS data plotting with lcmsPlot | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | MassSpectrometry, Metabolomics, Software |
| Version | 1.1.17 |
| In Bioconductor since | BioC 3.23 (R-4.6) (< 6 months) |
| License | GPL-3 |
| Depends | R (>= 4.4.0) |
| Imports | methods, rlang, dplyr (>= 1.1.0), tibble, tidyr, BiocParallel, MSnbase, xcms, MsExperiment, mzR, Spectra, MsBackendMsp, S4Vectors, ggplot2, scales, patchwork, DBI, RSQLite, jsonlite |
| System Requirements | |
| URL | https://github.com/computational-metabolomics/lcmsPlot |
| Bug Reports | https://github.com/computational-metabolomics/lcmsPlot/issues |
See More
| Suggests | knitr, rmarkdown, BiocStyle, openxlsx, faahKO, rawrr, msPurity, ggnewscale, htmltools, shiny, shinytoastr, shinytest2, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | xcms |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | lcmsPlot_1.1.17.tar.gz |
| Windows Binary (x86_64) | lcmsPlot_1.1.17.zip |
| macOS Binary (big-sur-x86_64) | lcmsPlot_1.1.17.tgz |
| macOS Binary (sonoma-arm64) | lcmsPlot_1.1.17.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/lcmsPlot |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/lcmsPlot |
| Package Short Url | https://bioconductor.org/packages/lcmsPlot/ |
| Package Downloads Report | Download Stats |