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fdrame

This is the development version of fdrame; for the stable release version, see fdrame.

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FDR adjustments of Microarray Experiments (FDR-AME)

DOI: 10.18129/B9.bioc.fdrame

Bioconductor version: Development (3.24)

This package contains two main functions. The first is fdr.ma which takes normalized expression data array, experimental design and computes adjusted p-values It returns the fdr adjusted p-values and plots, according to the methods described in (Reiner, Yekutieli and Benjamini 2002). The second, is fdr.gui() which creates a simple graphic user interface to access fdr.ma

Author: Yoav Benjamini, Effi Kenigsberg, Anat Reiner, Daniel Yekutieli

Maintainer: Effi Kenigsberg <effiken.fdrame at gmail.com>

Citation (from within R, enter citation("fdrame")):

Yoav Benjamini, Effi Kenigsberg, Anat Reiner, Daniel Yekutieli. fdrame: FDR adjustments of Microarray Experiments (FDR-AME). doi:10.18129/B9.bioc.fdrame, R package version 1.85.0, https://bioconductor.org/packages/fdrame.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("fdrame")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("fdrame")

Details

Package Archives

Follow Installation instructions to use this package in your R session.