dominatR
This is the development version of dominatR; for the stable release version, see dominatR.
Feature Dominance-based R Package for Genomic Data
Bioconductor version: Development (3.24)
dominatR is an R package for quantifying and visualizing feature dominance in datasets. dominatR applies concepts drawn from physics such as center of mass and shannon's entropy to effectively visualize features (e.g. genes) that are present within a specific context or condition. The package integrates, dataframes, matrices and SummerizedExperiment objects and is able to perform common genomic normalization methods. The key aspect is the generation of plots that serve to highlight context-relevant feature dominance.
Author: Simon Lizarazo [aut, cre] 
, Ethan Chen [aut], Rajendra K C [aut], Kevin Van Bortle [aut, cph]
Maintainer: Simon Lizarazo <silizarazoch at gmail.com>
citation("dominatR")):Simon Lizarazo, Ethan Chen, Rajendra K C, Kevin Van Bortle. dominatR: Feature Dominance-based R Package for Genomic Data. doi:10.18129/B9.bioc.dominatR, R package version 1.1.0, https://bioconductor.org/packages/dominatR.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("dominatR")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("dominatR")| Introduction to dominatR | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Classification, GeneExpression, Normalization, Software, Visualization |
| Version | 1.1.0 |
| In Bioconductor since | BioC 3.23 (R-4.6) (< 6 months) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.5.0) |
| Imports | scales, ggnewscale, SummarizedExperiment, dplyr, rlang, ggforce, geomtextpath, ggplot2 |
| System Requirements | |
| URL | https://github.com/VanBortleLab/dominatR https://vanbortlelab.github.io/dominatR/ |
| Bug Reports | https://github.com/VanBortleLab/dominatR/issues |
See More
| Suggests | BiocStyle, airway, tidyverse, knitr, rmarkdown, testthat (>= 3.0.0), dominatRData |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | dominatR_1.1.0.tar.gz |
| Windows Binary (x86_64) | dominatR_1.1.0.zip |
| macOS Binary (big-sur-x86_64) | dominatR_1.1.0.tgz |
| macOS Binary (sonoma-arm64) | dominatR_1.1.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/dominatR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/dominatR |
| Package Short Url | https://bioconductor.org/packages/dominatR/ |
| Package Downloads Report | Download Stats |