cyanoFilter
Phytoplankton Population Identification using Cell Pigmentation and/or Complexity
Bioconductor version: 3.24 · Package version: 1.21.0
An approach to filter out and/or identify phytoplankton cells from all particles measured via flow cytometry pigment and cell complexity information. It does this using a sequence of one-dimensional gates on pre-defined channels measuring certain pigmentation and complexity. The package is especially tuned for cyanobacteria, but will work fine for phytoplankton communities where there is at least one cell characteristic that differentiates every phytoplankton in the community.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("cyanoFilter")Details
| Maintainer | Oluwafemi Olusoji <oluwafemi.olusoji@uhasselt.be> |
| Author | Oluwafemi Olusoji [cre, aut], Aerts Marc [ctb], Delaender Frederik [ctb], Neyens Thomas [ctb], Spaak jurg [aut] |
| License | MIT + file LICENSE |
| URL | https://github.com/fomotis/cyanoFilter |
| Bug Reports | https://github.com/fomotis/cyanoFilter/issues |
| Downloads rank | 411 |
| Source branch | devel |
| biocViews | Clustering, FlowCytometry, OneChannel, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | cyanoFilter_1.21.0.tar.gz |
| Windows binary (x86_64) | cyanoFilter_1.21.0.zip |
| macOS binary (arm64) | cyanoFilter_1.21.0.tgz |
| macOS binary (x86_64) | cyanoFilter_1.21.0.tgz |