consensus

This is the development version of consensus; for the stable release version, see consensus.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8

Cross-platform consensus analysis of genomic measurements via interlaboratory testing method

Bioconductor version: Development (3.24)

An implementation of the American Society for Testing and Materials (ASTM) Standard E691 for interlaboratory testing procedures, designed for cross-platform genomic measurements. Given three (3) or more genomic platforms or laboratory protocols, this package provides interlaboratory testing procedures giving per-locus comparisons for sensitivity and precision between platforms.

Author: Tim Peters

Maintainer: Tim Peters <t.peters at garvan.org.au>

Citation (from within R, enter citation("consensus")):

Tim Peters. consensus: Cross-platform consensus analysis of genomic measurements via interlaboratory testing method. doi:10.18129/B9.bioc.consensus, R package version 1.31.0, https://bioconductor.org/packages/consensus.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("consensus")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("consensus")

Fitting and visualising row-linear models with \texttt{consensus}	PDF	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataRepresentation, GeneExpression, Microarray, QualityControl, RNASeq, Regression, Software
Version	1.31.0
In Bioconductor since	BioC 3.8 (R-3.5) (8 years)
License	BSD_3_clause + file LICENSE
Depends	R (>= 3.5), RColorBrewer
Imports	matrixStats, gplots, grDevices, methods, graphics, stats, utils
System Requirements
URL

Suggests	knitr, RUnit, rmarkdown, BiocGenerics
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	consensus_1.31.0.tar.gz
Windows Binary (x86_64)	consensus_1.31.0.zip
macOS Binary (big-sur-x86_64)	consensus_1.31.0.tgz
macOS Binary (sonoma-arm64)	consensus_1.31.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/consensus
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/consensus
Package Short Url	https://bioconductor.org/packages/consensus/
Package Downloads Report	Download Stats