augere.screen
Automatic Generation of Functional Screen Analyses
Bioconductor version: 3.24 · Package version: 0.99.2
Implements pipelines for generating functional screen analysis reports in the augere framework. This uses voom to test for differential abundance of barcodes with consolidation into gene-level statistics. Each pipeline function generates a self-contained Rmarkdown report with all of the steps required to reproduce the analysis.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("augere.screen")Details
| Maintainer | Aaron Lun <infinite.monkeys.with.keyboards@gmail.com> |
| Author | Aaron Lun [cre, aut] (ORCID: <https://orcid.org/0000-0002-3564-4813>) |
| License | MIT + file LICENSE |
| URL | https://github.com/augere-bioinfo/augere.screen |
| Bug Reports | https://github.com/augere-bioinfo/augere.screen/issues |
| Downloads rank | 52 |
| Source branch | devel |
| biocViews | FunctionalGenomics, GeneTarget, ReportWriting, Software, WorkflowManagement |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | augere.screen_0.99.2.tar.gz |
| Windows binary (x86_64) | augere.screen_0.99.2.zip |
| macOS binary (arm64) | augere.screen_0.99.2.tgz |
| macOS binary (x86_64) | augere.screen_0.99.2.tgz |