TiDEomics

Time-course Differential Expression analysis of omics data

Bioconductor version: 3.24 · Package version: 0.99.5

TiDEomics provides a comprehensive workflow for multi-group time-course omics data analysis, analysing time-dominant, group-dominant, and group-specific temporal effects through pairwise differential expression, variance decomposition, and co-expression module analysis (WGCNA). The package integrates quality control, data processing, functional enrichment, and extensive visualisation. It supports datasets with missing values (e.g., mass spectrometry-based proteomics), and operates on SummarizedExperiment objects to ensure compatibility with the Bioconductor ecosystem.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TiDEomics")