SwarnSeq
Differential Expression and Differential Zero Inflation analysis
Bioconductor version: 3.24 · Package version: 0.99.5
This R package performs differential expression and differential zero inflation analysis of single-cell RNA-seq (scRNA-seq) UMI counts data through adjusting cell capture efficiency.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SwarnSeq")Details
| Maintainer | Samarendra Das <samarendra.das@icar.org.in> |
| Author | Samarendra Das [aut, cre] (ORCID: <https://orcid.org/0000-0002-0263-7027>), Satyajit Chhatoi [aut], Indian Council of Agricultural Research [fnd], Science and Engineering Research Board [fnd] (Core Research Grant (CRG004960)) |
| License | GPL-3 |
| URL | https://github.com/nifmd-bbf/SwarnSeq |
| Bug Reports | https://github.com/nifmd-bbf/SwarnSeq/issues |
| Source branch | devel |
| biocViews | DifferentialExpression, GeneExpression, RNASeq, SingleCell, Software, StatisticalMethod |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | SwarnSeq_0.99.5.tar.gz |
| Windows binary (x86_64) | SwarnSeq_0.99.5.zip |
| macOS binary (arm64) | SwarnSeq_0.99.5.tgz |
| macOS binary (x86_64) | SwarnSeq_0.99.5.tgz |
Dependencies
Depends: R (>= 4.5.0)
Imports: stats, MASS, edgeR, SingleCellExperiment, SummarizedExperiment
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), BiocStyle