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SMAD

This is the development version of SMAD; for the stable release version, see SMAD.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9

Statistical Modelling of AP-MS Data (SMAD)

DOI: 10.18129/B9.bioc.SMAD

Bioconductor version: Development (3.24)

Assigning probability scores to protein interactions captured in affinity purification mass spectrometry (AP-MS) expriments to infer protein-protein interactions. The output would facilitate non-specific background removal as contaminants are commonly found in AP-MS data.

Author: Qingzhou Zhang [aut, cre] ORCID: 0000-0001-9540-2624

Maintainer: Qingzhou Zhang <zqzneptune at hotmail.com>

Citation (from within R, enter citation("SMAD")):

Qingzhou Zhang. SMAD: Statistical Modelling of AP-MS Data (SMAD). doi:10.18129/B9.bioc.SMAD, R package version 1.29.0, https://bioconductor.org/packages/SMAD.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("SMAD")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SMAD")

Details

Package Archives

Follow Installation instructions to use this package in your R session.