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RSVSim

This is the development version of RSVSim; for the stable release version, see RSVSim.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12

RSVSim: an R/Bioconductor package for the simulation of structural variations

DOI: 10.18129/B9.bioc.RSVSim

Bioconductor version: Development (3.24)

RSVSim is a package for the simulation of deletions, insertions, inversion, tandem-duplications and translocations of various sizes in any genome available as FASTA-file or BSgenome data package. SV breakpoints can be placed uniformly accross the whole genome, with a bias towards repeat regions and regions of high homology (for hg19) or at user-supplied coordinates.

Author: Christoph Bartenhagen

Maintainer: Christoph Bartenhagen <c.bartenhagen at uni-koeln.de>

Citation (from within R, enter citation("RSVSim")):

Christoph Bartenhagen. RSVSim: RSVSim: an R/Bioconductor package for the simulation of structural variations. doi:10.18129/B9.bioc.RSVSim, R package version 1.53.0, https://bioconductor.org/packages/RSVSim.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("RSVSim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RSVSim")

Details

Package Archives

Follow Installation instructions to use this package in your R session.