RBPEqBind

RNA-Binding Protein Competitive Binding Simulation

Bioconductor version: 3.24 · Package version: 0.99.4

Simulates competitive binding of N RBPs to RNA sequences using an equilibrium binding model. Supports single sequences, concentration grids, and transcriptome-wide analysis. Designed for Bioconductor.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RBPEqBind")

Details

Maintainer	Soon Yi <cu.soonyi@gmail.com>
Author	Soon Yi [aut, cre] (ORCID: <https://orcid.org/0000-0002-4535-6532>), National Institutes of Health [fnd] (T32 GM152319)
License	GPL-3
URL	https://github.com/S00NYI/RBPEqBind
Bug Reports	https://github.com/S00NYI/RBPEqBind/issues
Source branch	devel
biocViews	FunctionalGenomics, GeneRegulation, MathematicalBiology, Software, SystemsBiology, Transcriptomics, Visualization

Documentation

Introduction to RBPEqBind

Download

Follow the installation instructions to use this package in your R session.

Source package	RBPEqBind_0.99.4.tar.gz
Windows binary (x86_64)	RBPEqBind_0.99.4.zip
macOS binary (arm64)	RBPEqBind_0.99.4.tgz
macOS binary (x86_64)	RBPEqBind_0.99.4.tgz

Dependencies

Depends: R (>= 4.5.0)

Imports: Biostrings, data.table, future.apply, GenomicRanges, ggplot2, IRanges, jsonlite, rtracklayer, S4Vectors, stats, SummarizedExperiment, utils

Suggests: testthat (>= 3.0.0), knitr, rmarkdown, progressr, BiocStyle, future, vdiffr