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MSTree

This is the development version of MSTree; to use it, please install the devel version of Bioconductor.

MSTree plotting minimum spanning tree directly from the output of ChewBBACA pipeline

DOI: 10.18129/B9.bioc.MSTree

Bioconductor version: Development (3.24)

This package is used to generate a graph object from the output of chewBBACA pipeline (https://chewbbaca.readthedocs.io/en/latest/). Then, the generated graph object can be used to make a minimum spanning tree (MST). The minimum spanning tree can be customized using all the available arguments. This package consists of two functions: one to build the graph and another one for plotting.

Author: Abdullah El-Kurdi [aut, cre] ORCID: 0000-0002-8321-4025

Maintainer: Abdullah El-Kurdi <ak161 at aub.edu.lb>

Citation (from within R, enter citation("MSTree")):

Abdullah El-Kurdi. MSTree: MSTree plotting minimum spanning tree directly from the output of ChewBBACA pipeline. doi:10.18129/B9.bioc.MSTree, R package version 0.99.6, https://bioconductor.org/packages/MSTree.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("MSTree")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MSTree")

Details

Package Archives

Follow Installation instructions to use this package in your R session.