Bioc2026 Registration Open!

DNABarcodes

A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments

Bioconductor version: 3.24 · Package version: 1.43.0

The package offers a function to create DNA barcode sets capable of correcting insertion, deletion, and substitution errors. Existing barcodes can be analysed regarding their minimal, maximal and average distances between barcodes. Finally, reads that start with a (possibly mutated) barcode can be demultiplexed, i.e., assigned to their original reference barcode.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DNABarcodes")

Details

MaintainerTilo Buschmann <tilo.buschmann.ac@gmail.com>
AuthorTilo Buschmann <tilo.buschmann.ac@gmail.com>
LicenseGPL-2
Downloads rank487
Source branchdevel
biocViewsPreprocessing, Sequencing, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageDNABarcodes_1.43.0.tar.gz
Windows binary (x86_64)DNABarcodes_1.43.0.zip
macOS binary (arm64)DNABarcodes_1.43.0.tgz
macOS binary (x86_64)DNABarcodes_1.43.0.tgz
Dependencies

Depends: Matrix, parallel

Imports: Rcpp (>= 0.11.2), BH

LinkingTo: Rcpp, BH

Suggests: knitr, BiocStyle, rmarkdown

Reverse dependencies

Suggests Me (1): posDemux