Package: mapscape
Title: mapscape
Version: 1.8.0
Authors@R: person("Maia", "Smith", email = "maiaannesmith@gmail.com",
        role = c("aut", "cre"))
Description: MapScape integrates clonal prevalence, clonal hierarchy,
        anatomic and mutational information to provide interactive
        visualization of spatial clonal evolution. There are four
        inputs to MapScape: (i) the clonal phylogeny, (ii) clonal
        prevalences, (iii) an image reference, which may be a medical
        image or drawing and (iv) pixel locations for each sample on
        the referenced image. Optionally, MapScape can accept a data
        table of mutations for each clone and their variant allele
        frequencies in each sample. The output of MapScape consists of
        a cropped anatomical image surrounded by two representations of
        each tumour sample. The first, a cellular aggregate, visually
        displays the prevalence of each clone. The second shows a
        skeleton of the clonal phylogeny while highlighting only those
        clones present in the sample. Together, these representations
        enable the analyst to visualize the distribution of clones
        throughout anatomic space.
Depends: R (>= 3.3)
Imports: htmlwidgets (>= 0.5), jsonlite (>= 0.9.19), base64enc (>=
        0.1-3), stringr (>= 1.0.0)
License: GPL-3
LazyData: true
RoxygenNote: 6.0.1
biocViews: Visualization
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/mapscape
git_branch: RELEASE_3_9
git_last_commit: e484180
git_last_commit_date: 2019-05-02
Date/Publication: 2019-05-02
NeedsCompilation: no
Packaged: 2019-05-03 04:37:50 UTC; biocbuild
Author: Maia Smith [aut, cre]
Maintainer: Maia Smith <maiaannesmith@gmail.com>
Built: R 3.6.0; ; 2019-05-03 13:48:58 UTC; windows
