.hyper_enrichment {hypeR} | R Documentation

## Carry out set enrichment test based on hyper-geometric distribution

### Description

Carry out set enrichment test based on hyper-geometric distribution

### Usage

    .hyper_enrichment(drawn, categories,
      ntotal = length(unique(unlist(categories))), min.drawsize = 4,
      mht = TRUE, verbose = FALSE)

### Arguments

`drawn` | One or more sets of 'drawn' items (e.g., genes). Basically, a list of signatures.
`categories` | list of gene sets (e.g., MSigDB c2)
`ntotal` | background population, i.e., the total no. of items from which items are supposed to have been drawn
`min.drawsize` | min no. of drawn items that must be among categories' items
`mht` | correct for multiple hypothesis testing across multiple 'draws'
`verbose` | Use false to suppress logs

### Value

a data.frame with rows indexed by the signature(s) tested

[Package hypeR version 1.00.0 Index]