saveAsPDF {pathVar} | R Documentation

## Save the plots of the significant pathway or a chosen list of pathways as a pdf.

### Description

Save the plots of the significant pathway or a chosen list of pathways as a pdf.

### Usage

    saveAsPDF(pvalue_results,sig,listPath="significant")

### Arguments

`pvalue_results` | output of `pathVarTwoSamples` or `pathVarOneSample` step.
`sig` | output of `sigPway` or NULL.
`listPath` | the string "significant" if you want to save the plots of the significant pathways or a list of names of pathways of interest.

### Details

Save the plots of the significant pathway or a chosen list of pathways as a pdf.

### Value

A pdf of the results from `sigPway`.

### Author(s)

Laurence de Torrente, Samuel Zimmerman, Jessica Mar

### Examples

    # we run the 2 samples analysis on the first 10 pathways from kegg
    pways.kegg.10pways <- lapply(pways.kegg, function(x) x[1:10])
    results_2samples=pathVarTwoSamplesCont(bock, pways.kegg.10pways,groups=as.factor(c(rep(1,10),rep(2,10))))
    sigPways <- sigPway(results_2samples,0.05)
    saveAsPDF(results_2samples,sigPways,listPath="significant")

[Package pathVar version 1.12.0 Index]