singlegeneplot {TSCAN} | R Documentation

## singlegeneplot

### Description

plot expression values of individual genes against pseudotime axis

### Usage

    singlegeneplot(geneexpr, TSCANorder, cell_size = 2)

### Arguments

`geneexpr` | The gene expression values. Names should agree with the pseudotime information.
`TSCANorder` | The output of function `TSCANorder`.
`cell_size` | Size of cells in the plot.

### Details

This function plots the expression values of individual genes against given pseudotime

### Value

ggplot2 object.

### Author(s)

Zhicheng Ji, Hongkai Ji <zji4@zji4.edu>

### Examples

    data(lpsdata)
    procdata <- preprocess(lpsdata)
    lpsmclust <- exprmclust(procdata)
    lpsorder <- TSCANorder(lpsmclust,orderonly=FALSE,flip=TRUE)
    #Choose STAT1 gene expression to plot
    STAT2expr <- log2(lpsdata["STAT2",]+1)
    singlegeneplot(STAT2expr, lpsorder)

[Package TSCAN version 1.20.0 Index]