decay_data {RNAdecay} | R Documentation

## Normalized RNA abundance RNA decay timecourse

### Description

A long form dataset of RNA abundance of 118 genes in four Arabidopsis thaliana genotypes (WT, sov, vcs, vcs sov). Four biological replicates were collectred 0, 7.5, 15, 30, 60, 120, 240, 480 min after blocking transcription. RNA was extracted, subjected to ribodepletion, and sequenced by RNA-seq (Illumina 50 nt single end reads). RPM values were normalized to mean T0 abundance and corrected by a decay factor.

### Usage

    decay_data

### Format

a data frame with 5 columns and 15104 rows.

geneID

  gene identifier; AGI

treatment

  Arabidopsis genotype

t.decay

  time of decay, in minutes

rep

  replicate number

value

  RPM value normalized to the replicate samples' mean T0 abundance and decay factor corrected

### Source

Sorenson et al. (2017) Submitted; https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE86361

[Package RNAdecay version 1.2.1 Index]