Sc.phenomat.dynamic {DTA} | R Documentation

## Design of the Saccharomyces Cerevisiae salt stress DTA experiment from Miller et al.

### Description

The phenotype matrix `Sc.phenomat.dynamic` contains information about the experimental design. It is comprised of the filename, the type of RNA fraction measured (T, U or L), the labeling time, the replicate number and an additional number indicating the timecourse order.

### Usage

    Sc.phenomat.dynamic

### Format

The phenomat is a matrix comprised of the file name, the type of RNA fraction mesasured (T, U or L, `fraction` column), the labeling time (`time`,`timeframe` column), the replicate number (`nr` column) and a number indicating the timecourse order (`timecourse` column). Rows in this matrix represent the individual experiments.

### Source

C. Miller, B. Schwalb, K. Maier, D. Schulz, S. Duemcke, B. Zacher, A. Mayer, J. Sydow, L. Marcinowski, L. Doelken, D. E. Martin, A. Tresch, and P. Cramer. Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast. Mol Syst Biol, 7:458, 2011.

[Package DTA version 2.28.0 Index]