getparams {CNVtools} | R Documentation

## Return mixture parameters

### Description

This function should be invisible to most users. Given the full expanded data frame, getparams returns the number of components, the copy number, the mixture model parameters for each batch, the likelihood of the model and the p(disease|c).

### Usage

    getparams(d)

### Arguments

`d` | Full expanded data frame.

### Value

`ns` | Number of batches
`nc` | Copy number of this model
`nind` | Number of individuals
`lnL` | log likelihood
`alpha` | Matrix. The mixture proportions
`mean` | Matrix. The mixture means
`var` | Matrix. The mixture variances
`pdc` | Matrix. The p(disease|c)

### Author(s)

Vincent Plagnol vincent.plagnol@cimr.cam.ac.uk and Chris Barnes christopher.barnes@imperial.ac.uk

[Package CNVtools version 1.76.0 Index]