# Inversions in genotype data

## Documentation for package ‘inveRsion’ version 1.26.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

inveRsion-package | Detection of Genetic inversions using SNP-array data
ac | Sample data set of class accuracy
accBic | accBic computes "accuracy" from "inversionList"
accBic-method | accBic computes "accuracy" from "inversionList"
accBic-methods | accBic computes "accuracy" from "inversionList"
accuracy-class | Class "accuracy"
codeHaplo | Codes haplotypes into decimal integers
gDat | Sample data of class genoDat
GenoDat-class | Class "GenoDat"
GenoDatROI-class | Class "GenoDatROI"
getClassif | Overall classification
getClassif-method | Overall classification
getClassif-methods | Overall classification
getInv | gets "scan" into a matrix
getInv-method | gets "scan" into a matrix
getInv-methods | gets "scan" into a matrix
getROIs | Extracts regions of possible inversion events from "scan"
getROIs-method | Extracts regions of possible inversion events from "scan"
getROIs-methods | Extracts regions of possible inversion events from "scan"
hapCode | Sample data set of class HaploCode
HaploCode-class | Class "HaploCode"
initialize-method | Class "GenoDatROI"
initialize-method | Class "HaploCode"
inveRsion | Detection of Genetic inversions using SNP-array data
inversion-class | Class "inversion"
inversionList-class | Class "inversionList"
invList | Sample data of class inversionList
listInv | Constructor of class inversionList
listInv-method | Constructor of class inversionList
listInv-methods | Constructor of class inversionList
plot-method | Class "GenoDat"
plot-method | Class "accuracy"
plot-method | Class "inversionList"
plot-method | Class "scan"
ROIGenoDat | Class "GenoDatROI"
scan-class | Class "scan"
scanInv | Inversion scan
scanRes | Sample data set of class scan
setUpGenoDatFile | Loads genotype data onto R
setUpGenoDatSNPmat | Loads genotype data onto R
show-method | Class "GenoDat"
show-method | Class "GenoDatROI"
show-method | Class "HaploCode"
show-method | Class "inversionList"
show-method | Class "scan"