# Pedigree and genetic relationship functions

## Documentation for package ‘GeneticsPed’ version 1.40.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

as.character.Pedigree | Pedigree
as.factor.Pedigree | Pedigree
as.integer.Pedigree | Pedigree
as.Pedigree | Pedigree
as.Pedigree.data.frame | Pedigree
as.Pedigree.matrix | Pedigree
as.Pedigree.Pedigree | Pedigree
check | Check consistency of data in pedigree
check.Pedigree | Check consistency of data in pedigree
checkId | Check consistency of data in pedigree
extend | Extend pedigree
Falconer | Pedigree and data examples
Falconer5.1 | Pedigree and data examples
family | Find families (lines) in the pedigree
family<- | Find families (lines) in the pedigree
gameteFlowM | Gene and gamete flow matrices
geneContribution | Gene contribution or proportion of genes in pedigree by individual
geneFlowT | Gene and gamete flow matrices
geneFlowTinv | Gene and gamete flow matrices
generatePedigree | Generate Pedigree example
generation | Calculate generation value
generation<- | Calculate generation value
gpi | Genotype probability index
gpLong2Wide | Utility functions for gpi()
hwp | Utility functions for gpi()
inbreeding | Inbreeding coefficient
inverseAdditive | Additive relationship matrix and its inverse
is.Pedigree | Pedigree
isFounder | Founder and non-founder individuals in the pedigree
kinship | Additive relationship matrix and its inverse
mendelianSamplingD | Gene and gamete flow matrices
model.matrix.Pedigree | Model matrix for individuals with and without records
Mrode | Pedigree and data examples
Mrode2.1 | Pedigree and data examples
Mrode3.1 | Pedigree and data examples
nIndividual | Number of individuals in a pedigree
Pedigree | Pedigree
prune | Prune pedigree
relationshipAdditive | Additive relationship matrix and its inverse
removeIndividual | Remove individual from pedigree
sort.Pedigree | Sort pedigree
summary.Pedigree | Pedigree summary
undocumented | Undocumented functions