clustifyrdatahub

This is the development version of clustifyrdatahub; for the stable release version, see clustifyrdatahub.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12

External data sets for clustifyr in ExperimentHub

Bioconductor version: Development (3.24)

References made from external single-cell mRNA sequencing data sets, stored as average gene expression matrices. For use with clustifyr <https://bioconductor.org/packages/clustifyr> to assign cell type identities.

Author: Rui Fu [aut] ORCID: 0000-0001-8183-4549 , Kent Riemondy [aut, cre] ORCID: 0000-0003-0750-1273 , RNA Bioscience Initiative [fnd], Austin Gillen [ctb] ORCID: 0000-0003-2928-6308 , Jay Hesselberth [ctb] ORCID: 0000-0002-6299-179X , Sidhant Puntambekar [ctb]

Maintainer: Kent Riemondy <kent.riemondy at cuanschutz.edu>

Citation (from within R, enter citation("clustifyrdatahub")):

Rui Fu, Kent Riemondy. clustifyrdatahub: External data sets for clustifyr in ExperimentHub. doi:10.18129/B9.bioc.clustifyrdatahub, R package version 1.23.0, https://bioconductor.org/packages/clustifyrdatahub.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("clustifyrdatahub")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clustifyrdatahub")

clustifyrdatahub	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, MicroarrayData, PackageTypeData, RNASeqData, SequencingData, SingleCellData
Version	1.23.0
In Bioconductor since	BioC 3.12 (R-4.0) (6 years)
License	MIT + file LICENSE
Depends	R (>= 4.0), ExperimentHub
Imports	utils
System Requirements
URL	https://rnabioco.github.io/clustifyrdatahub/
Bug Reports	https://github.com/rnabioco/clustifyrdatahub/issues

Suggests	clustifyr, Seurat, usethis, rmarkdown, knitr, tidyr, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	clustifyrdatahub_1.23.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/clustifyrdatahub
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/clustifyrdatahub
Package Short Url	https://bioconductor.org/packages/clustifyrdatahub/
Package Downloads Report	Download Stats