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aracne.networks

This is the development version of aracne.networks; for the stable release version, see aracne.networks.

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3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4

ARACNe-inferred gene networks from TCGA tumor datasets

DOI: 10.18129/B9.bioc.aracne.networks

Bioconductor version: Development (3.24)

This package provides access to ARACNe-inferred gene regulatory networks (regulons) from TCGA tumor datasets. The networks are hosted on Zenodo, downloaded on demand and cached locally with BiocFileCache. The package also contains a function to export them into plain-text format.

Author: Federico M. Giorgi [aut, cre] ORCID: 0000-0002-7325-9908 , Mariano J. Alvarez [aut]

Maintainer: Federico M. Giorgi <federico.giorgi at gmail.com>

Citation (from within R, enter citation("aracne.networks")):

Federico M. Giorgi, Mariano J. Alvarez. aracne.networks: ARACNe-inferred gene networks from TCGA tumor datasets. doi:10.18129/B9.bioc.aracne.networks, R package version 1.39.1, https://bioconductor.org/packages/aracne.networks.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("aracne.networks")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("aracne.networks")

Details

Package Archives

Follow Installation instructions to use this package in your R session.