DaparToolshedData
This is the development version of DaparToolshedData; to use it, please install the devel version of Bioconductor.
Data accompanying the DaparToolshed and Prostar 2 packages
Bioconductor version: Development (3.24)
Mass-spectrometry based UPS proteomics data sets from Ramus C, Hovasse A, Marcellin M, Hesse AM, Mouton-Barbosa E, Bouyssie D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianferani S, Ferro M, Dorssaeler AV, Burlet-Schiltz O, Schaeffer C, Coute Y, Gonzalez de Peredo A. Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods. Data Brief. 2015 Dec 17;6:286-94 and Giai Gianetto, Q., Combes, F., Ramus, C., Bruley, C., Coute, Y., Burger, T. (2016). Calibration plot for proteomics: A graphical tool to visually check the assumptions underlying FDR control in quantitative experiments. Proteomics, 16(1), 29-32.
Author: Samuel Wieczorek [aut, cre] 
, Enora Fremy [aut]
Maintainer: Samuel Wieczorek <samuel.wieczorek at cea.fr>
citation("DaparToolshedData")):Samuel Wieczorek, Enora Fremy. DaparToolshedData: Data accompanying the DaparToolshed and Prostar 2 packages. doi:10.18129/B9.bioc.DaparToolshedData, R package version 0.99.21, https://bioconductor.org/packages/DaparToolshedData.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("DaparToolshedData")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DaparToolshedData")| DaparToolshd data using Bioconductor's ExperimentHub | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, ExperimentHub, MassSpectrometryData |
| Version | 0.99.21 |
| In Bioconductor since | BioC 3.24 (R-4.6) |
| License | GPL-2 |
| Depends | R (>= 4.5.0) |
| Imports | S4Vectors, utils, QFeatures, ExperimentHub, AnnotationHub |
| System Requirements | |
| URL | https://github.com/edyp-lab/DaparToolshedData https://edyp-lab.github.io/DaparToolshedData/ |
| Bug Reports | https://github.com/edyp-lab/DaparToolshedData/issues |
See More
| Suggests | rmarkdown, BiocStyle, testthat, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DaparToolshedData_0.99.21.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/DaparToolshedData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DaparToolshedData |
| Package Short Url | https://bioconductor.org/packages/DaparToolshedData/ |
| Package Downloads Report | Download Stats |