78b12c8bd45a2c84c0bf988e5d5ae378 *DESCRIPTION
cc032f681cc6090675a8dc83eea6c5cd *NAMESPACE
3148f7352b48410cc8674a7193c62ba3 *NEWS
b485a21ffb3bb4b484c61229f7e30391 *R/RcppExports.R
daf4f19cee633302211d626a9a74bbf1 *R/add_multifreq.R
4e25c397c3a3ed44de71844497de66cb *R/compare_motifs.R
ea5af040fb755ad37c8b4eee367f2d92 *R/compare_motifs_lite.R
9065649dee87a329cd0abaae647a014b *R/compare_report.R
5506a40c61eba7d0627a8b6fa9bd8c38 *R/convert_motifs.R
573e5c902885714ca31cf92436e2b980 *R/convert_type.R
3b80c62d3472795bb75f9ea52c62611f *R/create_motif.R
e98775a924366b100a1606e35ac14bc0 *R/create_sequences.R
ddb6d6a36f14d3b4b272d31790ff862a *R/data.R
599fc583cba9b971b2d538a57bb77157 *R/dedup_hits.R
91da0404138325df00867aa9e88a7a56 *R/enrich_motifs.R
3ce247f931b2d97e823453c76b258da3 *R/enrich_motifs_lite.R
114d5d31d6437ce765a9611d3721abff *R/filter_motifs.R
798f5efbdf95847a62115350e7912137 *R/geom_motif.R
997ef179d24426a2c9cf99ed45178b5a *R/get_bkg.R
28bc1554539cec9b212def07c2f13843 *R/implant_motifs.R
dc828448035d6280814673a76ce4298c *R/make_DBscores.R
0bcb4b62e9052b20ed63a7caf7d50b94 *R/match_bkg.R
819205684a1a5f48c25e9e24fd402737 *R/merge_motifs.R
cb3f802c6afbf1cb64d03b52a4682542 *R/merge_motifs_lite.R
94be50d5e3f9b7227c2934001460e61a *R/merge_similar.R
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b08c4af213a460241bdf76d1312adb40 *R/motif_coocc.R
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84014f5e7d33b9cc4309f59e44b4a92e *R/motif_peaks.R
cf7ce1ff717ccc9c8be1a4b20ed91c2c *R/motif_proximity.R
411b4db0365845b0089a03efb708b565 *R/motif_pvalue.R
92f55c7d0090a7152f0a037e3b22fffa *R/motif_rc.R
9f79593b5ee3e676380d93849ee6bfc6 *R/motif_tree.R
41da7682c1536a9ae62062aa865a1478 *R/motif_tree_lite.R
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f985d5ec02d1d4aa9720b904b2daa575 *R/read_homer.R
4e39825502eaae4ab1a0f21716179a0b *R/read_jaspar.R
cd66b6f74d15211f977be49f44b75ea5 *R/read_matrix.R
5b39c49392a8c80311925edc7ea3603a *R/read_meme.R
89bbcb20b8ef76627f028971abd50393 *R/read_motifs.R
4c0609a684ba5952baabbc9cb82f004e *R/read_transfac.R
351fccb5f76c22d3cf5d9302dea25909 *R/read_uniprobe.R
a0c88e47149b96b6b0248746ee110f21 *R/run_meme.R
2a8420f79444a54383a7a07d3a67efba *R/sample_sites.R
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8cb795464a6ef1e25dd62f4cdcc2cc08 *R/scan_sequences_lite.R
cb25ec0798b15a52fbf5b341e17d648a *R/sequence_complexity.R
85b6627ee29593d97e5999223a9e5629 *R/shuffle_motifs.R
4c56f70402cdb06d33a840416df2bb4c *R/shuffle_sequences.R
c2a48d26fbec274b3fefc24855e95584 *R/switch_alph.R
4cf67c9ccfbd3604b7dd378a7477fcc8 *R/trim_cwm.R
99925312d1cc55d4dae52034c4d30eef *R/trim_motifs.R
342e27f46f7685c8a126df4a496f142c *R/universalmotif-class.R
07b2599e0b59bcf5b836cb446a6a9e8e *R/universalmotif-methods.R
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90c9fc622e2f8fdd520a528235b01cdb *R/universalmotif_df.R
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884d4d05235420294c113b643d38caa2 *R/utils-motif.R
a679aa1a489f9ae0ca6316e1efb1e591 *R/utils-sequence.R
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8ee5b9b27d27b84cd92e82e1f09c32ba *R/write_jaspar.R
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5f8c5e1a940f535645e41f3988ba5e08 *R/zzz.R
99bd46b2681ce433305ab6110a596a71 *README.md
533839446f70bde34a1050627ce80586 *build/partial.rdb
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5e29532dd526357344874a3bc9b82de0 *inst/figures/example1.png
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8f072f781f8747b6f4460ec5d5890f07 *man/create_sequences.Rd
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a613f1a8d1c38b7d08cea6a02f8d1930 *vignettes/ChIPseqWorkflow.Rmd
df4c93c432831369a6fe72245c64e214 *vignettes/Introduction.Rmd
ad7a9630a3f83244885895b0fdc1902b *vignettes/IntroductionToSequenceMotifs.Rmd
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ea0001c6ce8bd38f66bf65709d456235 *vignettes/MotifDatabaseCuration.Rmd
513e54713e1133c0aa8944522caddef9 *vignettes/MotifManipulation.Rmd
7c45230f65edfddfa41c853c837fc146 *vignettes/SequenceSearches.Rmd
9d4b2c675eeeb84fb14ceb0a775aa34a *vignettes/universalmotif.bib
