Package: seqRdna
Title: Tools for Calculating for rDNA in Sequencing Data
Version: 0.99.5
Authors@R: c(
    person(
      given = "Daniel", 
      family = "Vaughan", 
      role = c("aut", "cre"), 
      email = "daniel.1.vaughan@kcl.ac.uk",
      comment = c(ORCID = "0009-0001-6165-2024")
    ),
    person(
        given = "Medical Research Council (MRC)",
        role = "fnd"
    )
    )
Description: Functions for working with rDNA data generated from sequencing experiments. The package includes functions to calculate the relative rDNA copy number from coverage data, as well as functions to calculate the absolute rDNA copy number using methylation data.
Depends: R (>= 4.5.0)
Imports: methylKit, GenomicRanges, IRanges, S4Vectors, methods, glmmTMB
License: MIT + file LICENSE
Encoding: UTF-8
URL: https://github.com/MuscleOmicsLab/seqRdna
BugReports: https://github.com/MuscleOmicsLab/seqRdna/issues
Config/roxygen2/version: 8.1.1
Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
biocViews: Software, DNAMethylation, Epigenetics, CopyNumberVariation,
        Sequencing, Coverage
git_url: https://git.bioconductor.org/packages/seqRdna
git_branch: devel
git_last_commit: 056ef16
git_last_commit_date: 2026-11-02
Repository: Bioconductor 3.24
Date/Publication: 2026-11-04
NeedsCompilation: no
Packaged: 2026-11-05 01:28:52 UTC; biocbuild
Author: Daniel Vaughan [aut, cre] (ORCID:
    <https://orcid.org/0009-0001-6165-2024>),
  Medical Research Council (MRC) [fnd]
Maintainer: Daniel Vaughan <daniel.1.vaughan@kcl.ac.uk>
