15b9a387df69502c1a6222fe354d6acc *DESCRIPTION
2499d39c338e1fc6b30698cb693eed43 *NAMESPACE
97ef3852f2e17c6d6683a28df94d06e3 *NEWS.md
65dc386d3768b603ac3e032d2230df0d *R/01_domain_annotation.R
69999be6a7ce20ddaa5664238d1a6975 *R/02_classification.R
9c5514410356e854ee27b97cdb75fb6d *R/03_tf_counts.R
52b9f7f6704a391d8e9df2be183230b9 *R/classification_planttfclass.R
e33114f79efda526dcd1c9f36b648c22 *R/classification_planttfdb.R
08139e39db1e27831a0f6fcb1d3e2c09 *R/classification_tapscan.R
34d776ee12bc291c5a4065336589b8b7 *R/data.R
df6cc46bc7fae1a55b713f3d5065b35a *R/planttfhunter-package.R
a3d9b4c507ff37700109c750fcce71a9 *R/sysdata.rda
9f1a35e45c47291d802e640f89e3cdcb *R/utils.R
8dfdac69524c554527c8940638acff0a *README.md
40747f8f5cce7e1a9316f4a2656b4759 *build/vignette.rds
57fad5dcddf1d8e751035213034e46d1 *data/gsu.rda
e344baaf7aabfe48719e2fda44e96e09 *data/gsu_annotation.rda
6160e34772ec01c03e8a727108abbb96 *data/planttfclass_scheme.rda
238bbe2a25b4b97252861d9963fa2a5d *data/planttfdb_scheme.rda
c3282a5913268b66b899dbe9264cc1f1 *data/tap_class.rda
7bda1d8a4e04ef1dbf08012c5ee1ec7b *data/tapscan_scheme.rda
6cb2b8cb801ccda099f35f45c0d454ef *inst/CITATION
4bcc42e316124856a508c5bdbcdac281 *inst/_pkgdown.yml
6847b72912d2b12838024614d09c7e7b *inst/doc/vignette_planttfhunter.R
3fd59f5356cd66453bba267a8f1e8881 *inst/doc/vignette_planttfhunter.Rmd
0ca2bee28c9dacd41f0f704c464c6684 *inst/doc/vignette_planttfhunter.html
c6ac734490dda12c99531418e0fa8628 *inst/extdata/PFAM.hmm
ee5b90f360a36a8a7e50f0e66bab7fc7 *inst/extdata/plantTFClass_to_tapscan.csv
1eebc0e2b4077a863e13d4655601f012 *inst/extdata/self_built.hmm
302809e12a5a68d1aa7fccb516bd12f6 *inst/extdata/tapscan/TAPscan_v13.hmm.gz
27bbe75ce2fa81b96208e14f6015edcb *inst/script/data_creation.md
f65aaed596f984dcbb732c138127ed55 *man/annotate_domains.Rd
65f49959342e954c66ace63b79d5e6e7 *man/classify_tfs.Rd
4f581a7b27557b49e652da5e346475ff *man/figures/README-pressure-1.png
8fa58cd8ec5642069eb4a09ae44c6ce1 *man/figures/logo.png
9f2e610f9f89e7e127ce834a4b7e5e35 *man/get_tf_counts.Rd
5c901a02ad96ba3dc33bab78a8d173e0 *man/gsu.Rd
b709c1ce03812a53a8f5dd48d5fdbb02 *man/gsu_annotation.Rd
476f83dd60a471871231331784025f95 *man/hmmer_is_installed.Rd
363c0ef643a30d868b5bdccf0b62a54e *man/planttfclass_scheme.Rd
d3086d03f38960e2c8c2e57a0618976d *man/planttfdb_scheme.Rd
e1bc5fc4eee2666e7052ee11531ad927 *man/planttfhunter-package.Rd
5ca2e255ecca12f989e761ebf0f3ae59 *man/tap_class.Rd
7f3c7a43c16c65ecdc4afce62484a159 *man/tapscan_scheme.Rd
6c469b07591bc823ae0039ece1feb7dc *tests/testthat.R
bd92a109bdd7adca8853ef86605ff5a0 *tests/testthat/fixtures/ectocarpus.domtblout.gz
2ada515db8a146579f4a58116db4c3a7 *tests/testthat/fixtures/ectocarpus_tapscan_families.txt.gz
f0e0f8be29f86a128c474078a46727e8 *tests/testthat/test-03_tf_counts.R
fad6ad6de1388850b010bc68bcddf91e *tests/testthat/test-classification.R
38f0f91bc53c6c8f96e2b3d5c9f7e37b *tests/testthat/test-domain_annotation.R
028052c85488a1d12c85277f56463582 *tests/testthat/test-planttfclass.R
08e70830e895527d31bc697aacd53d97 *tests/testthat/test-tapscan.R
6bee9431b474af8946c4ba8700bb82dd *tests/testthat/test-utils.R
48d7dd3f9fe313ee6f1a1db155d6abbc *vignettes/vignette_bibliography.bib
3fd59f5356cd66453bba267a8f1e8881 *vignettes/vignette_planttfhunter.Rmd
